ABSTRACT
Peroxidase was extracted from cabbage and was purified in three different purification processes. It was first purified by ammonium sulphate precipitation and highest peroxidase activity was observed at 80% saturation. Hence, 80% saturation was used to mass produce the enzyme. The enzyme was again purified by dialysis which tends to remove salt as impurity from the precipitated enzyme. The enzyme was further purified by gel filtration which further removed salts and other proteins as impurities. The resulting enzyme was characterized to determine the optimum pH and temperature. The optimum pH and temperature were respectively 5.0 and 45oC. The Km and Vmax obtained from Lineweaver-Burk plot of initial velocities at different concentration of H2O2 were found to be 3.68mM and 37.04U/ml respectively. Also, Km and Vmax of o-dianisidine were found to be 9.89mM and 28.57U/ml respectively. The enzymatic activity of this cabbage peroxidase with hydrogen peroxide on synthetic dyes was investigated and was found to be very effective in the treatment and decolorization of these dyes. This partially purified enzyme could decolorize many synthetic dyes; Azo Brilliant Black, Azo Trypan Blue, Azo Blue 5, Azo Citrus Red 2, Azo Yellow 6, Azo Pink, Azo Purple, Vat Green 11 and Vat Orange 9. Azo Trypan Blue and Vat Orange 11 had the highest and least percentage decolorization of 88.62 and 12% respectively after contact time of 1 hour. The cabbage peroxidase was found to decolorize Azo dyes more and had little effect on Vat dyes. This peroxidase could be an important source for dye and waste water decolorization.
CHAPTER ONE
INTRODUCTION
Large amounts of chemically different dyes are used for various industrial applications such as textile dyeing, paper and pulp, leather and plastics (Park et al.,
2007). Textile dyes represent a major class of organic pollutants that are found in the waste effluent discharged by these different industries (Kalsoom et al., 2013). Approximately 20% of the dye load is lost in the dyeing residues during textile processing which represents one of the greatest environmental problems faced by the sector (Guarantini and Zanoni, 2000). These dyes are designed to be resistant to light, water and oxidizing agents and are therefore the most problematic groups of pollutants, considered as xenobiotics that are not easily biodegradable (Ong et al.,
2011). The dye effluent contains chemicals that are toxic, carcinogenic, mutagenic, or teratogenic to various aquatic species and humans (Celebi et al., 2012). Among the textile dyes, azo dyes account for 60-70% of all textile dyestuffs used and show the largest spectrum of colours (Bae and Freeman, 2007). They are the most common group of synthetic colorants released into the environment (Saratale et al., 2011). The discharge of azo dyes into water bodies presents human and ecological risks, since both the original dyes and their biotransformation products can show toxic effects, mainly causing DNA damage. Therefore, the development of non-genotoxic dyes and investment in research to find effective treatments for effluents and drinking water is required, in order to avoid environmental and human exposure to these compounds and prevent the deleterious effects they can have on humans and aquatic organisms.
The treatment of dye wastewater involves chemical and physical methods such as adsorption, coagulation, oxidation, filtration and ionizing radiation. All these methods have different decolorization capabilities, operating speed and proven to be costly while producing large amounts of sludge (Leelakriangsak and Borisut, 2012). Biological processes have received increasing interest as a viable alternative owing to their cost effectiveness, ability to produce less sludge and environmental friendliness (Banat et al., 1996). However, synthetic dyes containing various substituents such as
nitro and sulfonic groups are not uniformly susceptible to bio-decolorization in conventional aerobic processes. Enzymatic approach has gained considerable interest in the decolorization/degradation of textile and other industrially important dyes present in wastewater. This strategy is ecofriendly and useful in comparison to conventional chemical, physical and biological treatments, which have inherent serious limitations. Stability, activity and specificity of an enzyme are the fundamental parameters that control the development of an industrial application (Torres and Ayala, 2010).
Many studies have demonstrated that fungi are able to degrade dyes and this capability to degrade dye is due to the extracellular, non-specific and non- stereoselective enzyme system (Bezalel et al., 1997). Peroxidases have been reported as excellent oxidant agents to degrade dyes (Kirby et al., 1995). Husain (2010) reported that many aromatic dyes could be decolorized by peroxidase through precipitation or breaking of the aromatic ring structure. Several bacterial, fungal and plant peroxidases have been used for decolorization of synthetic textile dyes. Fungal extracted peroxidases have been mostly studied in dye removal processes (Novotny et al., 2001). Decolorization of different azo dyes by Phanerochaete chrysosporium RP
78 under optimized conditions was studied by reaction mechanism via azo dye (Ghasemi et al., 2010). Bacterial lignin peroxidases from Pseudomonas aeruginosa and Serratia marcescens have been shown to give 50% to 58% decolourization effect on textile dye-based effluent (Bholay et al., 2012). However, using peroxidases from microorganisms to decolorize dyes involves high cost and therefore alternative sources such as plants are now considered (Chanwun et al., 2013). Among the plant peroxidases, the most studied are native or recombinant horseradish peroxidases, HRP (Shrivastav, 2003 and Tiirola et al., 2006). HRP has been shown to have the ability to precipitate and degrade aromatic azo compounds in the presence of H2O2 (Bhunia et al, 2001). It has been utilized for the removal of halogenated phenols and pentachlorophenol (Meizler et al., 2011; Li et al., 2011). Plant peroxidases have been extracted from African oil bean seeds, sorghum, tea leaf, wheat germ, green pea and papaya fruit oil (Lee and Klein, 1990; Silva et al., 1990; Converso and Fernandez,
1995; Kvaratskhelia et al., 1997; Eze et al., 2000; Eze, 2012;). Other peroxidases, such as peroxidases from Allium sativum, Ipomoea batatas, Raphanus sativus, Sorghum bicolor and soybean peroxidase have also been applied to phenol removal
(Al-Ansari et al., 2010 and Diao et al., 2011). Peroxidase has been extracted from red cabbage as reported by Ghahfarrokhi et al. (2013) but peroxidase from green cabbage is poorly studied. This research is therefore focused on the extraction, characterization, purification of peroxidase from green cabbage and its application on decolorization of industrial synthetic dyes.
1.1 Peroxidase
The name peroxidase was first used by Linossier, who isolated it from pus in
1898. They are one of the most extensively studied groups of enzymes (Azevedo et al., 2003). They are widely distributed in nature and are found in plants, microorganisms and animals where they catalyze the reduction of hydrogen peroxide (H2O2) to water (Bania and Mahanta, 2012). They use various peroxides (ROOH) as electron acceptors to catalyze a number of oxidative reactions. In mammals, they are implicated in biological processes as various as immune system or hormone regulations. In plants, they are involved in auxin metabolism, lignin and suberin formation, cross-linking of cell wall components, defense against pathogens or cell elongation. They also show bad effect on the quality of vegetables during post-harvest senescence, oxidation of phenolic substances, starch-sugar conversion and post- harvest demethylation of pectic substances leading to softening of plant tissues during ripening (Ghahfarrokhi et al., 2013). Humans contain more than 30 peroxidases whereas Arabidopsis thaliana has about 130 peroxidases that are grouped in 13 different families and nine subfamilies (Koua et al., 2009). Peroxidase families from prokaryotic organisms, protists and fungi have been shown to promote virulence (Brenot et al., 2004; Missall et al., 2005 and Pineyro et al., 2008). Commercially, peroxidases find application in biotransformations, bioremediation, in Analytical Biochemistry and as specific reagents such as bleaching agents. Peroxidases are classified as haem peroxidases and non-haem peroxidases and distributed between thirteen superfamilies and fifty subfamilies (Passardi et al., 2007).
1.1.1 Enzyme Commission Classification of peroxidase
Peroxidases can be found under the same enzyme classification number EC.1.11.1.x, donor: hydrogenperoxide oxidoreductase (Fleischmann et al., 2004). Currently, 15 different EC numbers have been ascribed to peroxidase, from EC
1.11.1.1 to EC 1.11.1.16, excluding EC 1.11.1.14 (Passardi et al., 2007). Due to the presence of dual enzymatic domains, other peroxidase families were classified with
the following numbers: EC 1.13.11.44, EC 1.14.99.1, EC 1.6.3.1 and EC 4.1.1.44. To date, certain peroxidases do not possess an EC number and can only be classified in EC 1.11.1.7. Two particular cases are also observed for EC 1.11.1.2 (NADPH peroxidase) and EC 1.11.1.3 (fatty acid peroxidase). NADPH peroxidase activities have been observed in different studies (Hochman and Goldberg, 1991). However there is no known peroxidase sequence that has been assigned to this EC number, probably due to the fact that none of the peroxidases known so far have a predominant NADPH peroxidase activity. Peroxidasins, peroxinectins, other non-animal peroxidases, dyptype peroxidases, hybrid ascorbate cytochrome c peroxidase and other class II peroxidases do not possess an EC number. The two independent EC numbers (1.11.1.9 and 1.11.1.12) both correspond to glutathione peroxidase and are based on the electron acceptor (hydrogen peroxide or lipid peroxide, respectively).
Table 1: The International Union of Biochemistry classification of peroxidases
EC number | Recommended name | Abbreviation in PeroxiBase |
EC 1.11.1.1 | NADH peroxidase | Nadprx |
EC 1.11.1.2 | NADPH peroxidase | No sequence available |
EC 1.11.1.3 | Fatty acid peroxidase | No sequence available |
EC 1.11.1.5 | Cytochrome C peroxidase | CcP, DiHCcP |
EC 1.11.1.6 | Catalase | Kat, Cp |
EC 1.11.1.7 | Peroxidase | POX |
EC 1.11.1.8 | Iodide peroxidase | TPO |
EC 1.11.1.9 | Glutathione peroxidase | GPx |
EC 1.11.1.10 | Chloride peroxidase | Halprx, HalNprx, HalVprx |
EC 1.11.1.11 | 1-ascorbate Superoxide | APX |
EC 1.11.1.12 | Phospholipidhydroperoxi | GPX |
de glutathione peroxidase | ||
EC 1.11.1.13 | Manganese peroxidase | MnP |
EC 1.11.1.14 | Lignin peroxidase | Lip |
EC 1.11.1.16 | Versatile peroxidase | VP |
EC 1.13.11.44 | Linoleate diol synthase | LDS |
EC 1.14.99.1 | Prostaglandinendoperoxi | PGHS |
de synthase |
EC 1.6.3.1 NAD(P)H oxidase DuOx
EC 4.1.1.44 4-carboxymuconolactone
Decarboxylase
AhpD, CMD, CMDn, HCMD,HCMDn, DCMD, DCMDn, Alkyprx, Alkyprxn
(Feischman et al., 2004).
1.1.2 Haem-Based and non-Haem based Classification
An important number of haem and non-haem peroxidase sequences are annotated and classified in the peroxidase database, PeroxiBase. PeroxiBase contains about
5800 peroxidase sequences classified as haem peroxidases and non-haem peroxidases and distributed between thirteen superfamilies and fifty subfamilies, (Passardi et al.,
2007). Haem and non-haem peroxidases are found in all kingdoms.
Figure 1: Schematic representation of the phylogenic relationships between the different protein classes and families found in PeroxiBase (Koua et al., 2009).
1.1.2.1 Haem based peroxidase
Haem peroxidase is found in plants, animals and microorganisms. They contain ferriprotoporphyrin IX (haematin or haem) as a prosthetic group (Rodrigo et al.,
1996). Out of 6,861 known peroxidase sequences collected in PeroxiBase, more than
73% of them code for haem-containing peroxidases. In the majority of cases, haem b is the prosthetic group and its evolutionary highly conserved amino acid surroundings influence its reactivity (Torres and Ayala, 2010). Haem peroxidases tend to promote rather than inhibit oxidative damage. Genes encoding haem peroxidases can be found in almost all kingdoms of life. They are grouped in two major superfamilies: one mainly found in bacteria, fungi and plants, Passardi et al. (2007) and a second mainly found in animals, fungi and bacteria (Daiyasu and Toh, 2000 and Furtmuller et al.,
2006). Members of the superfamily of plant/fungal/bacterial peroxidases (non-animal
peroxidases) have been identified in the majority of the living organisms except animals. The second superfamily described as “animal peroxidases” comprises a
group of homologous proteins mainly found in animals. The mammalian haem peroxidase plays a major role in both disease prevention and human pathologies (Koua et al., 2009). Some mammalian haem peroxidases use H2O2 to generate more aggressive oxidants to fight intruding microorganisms (Flohe and Ursini, 2008).
In addition to these two large superfamilies, smaller protein families are classified as capable to reduce peroxide molecules. Examples are Catalase (Kat) that can also oxidize hydrogen peroxide, dihaem cytochrome C peroxidases (DiHCcP), dyptype peroxidases (DypPrx), haloperoxidases with (HalPrx) or without (HalNPrx, HalVPrx) haem.
1.1.2.2. Non haem peroxidase
Non-haem peroxidases are not evolutionarily linked and form five independent superfamilies. These are alkylhydroperoxidase, NADH peroxidase (NadPrx), manganese catalases (MnCat) and thiol peroxidases. The largest one is the thiol peroxidase, which currently contains more than 1000 members grouped in two different subfamilies (Glutathione peroxidases and Peroxiredoxines).
1.1.3. Plant Peroxidases
Plant Peroxidases (PODs) are haem peroxidases. In the presence of peroxide, they oxidize a wide range of phenolic compounds, such as guaiacol, o-dianisidine, pyrogallol, chlorogenic acid, catechin, and catechol (Onsa et al., 2004). They are divided into three classes based on their structural and catalytic properties. The overall primary sequences and the 3-dimentional structure of these three peroxidases are quite different, implying that these subfamily genes evolve from distinct ancestral genes (Taurog, 1999). The amino acid sequences were found to be highly variable among the members of the plant peroxidase superfamily with less than 20% identity in the most divergent cases (Hiraga et al., 2001).
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DECOLORIZATION OF SYNTHETIC DYE USING PARTIALLY PURIFIED PEROXIDASE FROM GREEN CABBAGE (BRASSICA OLERACEA)>
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